Neurobagel
Neuro(imaging) metadata integration and search
Despite the progress in neuroimaging data sharing, defining study samples which fit specific research aims or criteria remains a challenge due to the distributed storage of datasets and inter-dataset heterogeneity in phenotypic and imaging data labels. The Neurobagel tool ecosystem enables the integration of heterogeneous neuroimaging datasets at the subject level via annotation that uses a unified metadata schema. Once annotated, these datasets can then be queried via federated search to form new, cross-dataset cohorts.
Neurobagel currently comprises the following interrelated tools:
/annotate- browser-based phenotypic data annotator/bagel-cli- CLI for creating subject-specific phenotypic and imaging data dictionaries/query-tool- browser-based app for querying Neurobagel subject data graph/api- REST API for Neurobagel graph operations/dash- browser-based dashboard for statuses of image processing tasks and derivatives
People
Sebastian Urchs
Research Software Developer
Jonathan Armoza
Research Software Developer
Arman Jahanpour
Research Software Developer
Alyssa Dai
Research Software Developer